Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs139918672 | chr19:43570913 | T/G | 0.000246 | 486 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs139925422 | chr16:15139825 | T/TTTGC | 1.41E-5 | 484 | 16.65 | 14 | 14.9 | KM Plot |
| THCA | rs140082554 | chr7:16421771 | T/C | 4.72E-9 | 485 | 15.13 | 17.7 | 17.77 | KM Plot |
| THCA | rs140109098 | chr2:48128806 | CTCAGT/C | 4.29E-8 | 488 | 15.23 | 19.47 | 8.27 | KM Plot |
| THCA | rs1401318 | chr1:224421166 | A/G | 0.000257 | 483 | 16.8 | 14.38 | 12.93 | KM Plot |
| THCA | rs140220349 | chr1:200538444 | CATT/C | 3.08E-10 | 481 | 15.23 | 20.5 | 9.57 | KM Plot |
| THCA | rs140247566 | chr3:157616218 | G/A | 0.000288 | 468 | 16.23 | 14.8 | 33.02 | KM Plot |
| THCA | rs140264333 | chr3:96799190 | G/GT | 2.8E-10 | 486 | 15.9 | 15.17 | 24.65 | KM Plot |
| THCA | rs140267762 | chr6:46136704 | CTAAA/C | 5.45E-5 | 488 | 15.77 | 16.67 | 27.37 | KM Plot |
| THCA | rs140277221 | chr9:72021739 | G/A | 3.47E-11 | 486 | 15.87 | 16.97 | 8.83 | KM Plot |
| THCA | rs140294107 | chr19:43588443 | C/T | 0.000261 | 485 | 15.3 | 18.03 | 10.08 | KM Plot |
| THCA | rs140381142 | chr7:67082966 | C/T | 1.17E-11 | 486 | 15.9 | 15.42 | 17.77 | KM Plot |
| THCA | rs140389871 | chr7:16468426 | G/GA | 3.85E-10 | 478 | 15.07 | 17.53 | 17.77 | KM Plot |
| THCA | rs140406012 | chr19:43576635 | C/T | 0.000256 | 485 | 15.32 | 18.3 | 10.08 | KM Plot |
| THCA | rs140407481 | chr1:224383257 | C/CT | 8.27E-5 | 472 | 16.8 | 14.47 | 13.88 | KM Plot |